| 1. | Alex Marquez | BK8 Gresini Racing MotoGP | 87 |
| 2. | Marc Marquez | Ducati Lenovo Team | 86 |
| 3. | Francesco „Pecco” Bagnaia | Ducati Lenovo Team | 75 |
| 4. | Franco Morbidelli | Pertamina Enduro VR46 Racing Team | 55 |
| 5. | Fabio Di Giannantonio | Pertamina Enduro VR46 Racing Team | 44 |
| 6. | AI Ogura | Trackhouse MotoGP Team | 25 |
| 7. | Johann Zarco | CASTROL Honda LCR | 25 |
| 8. | Marco Bezzecchi | Aprilia Racing | 24 |
| 9. | Luca Marini | Honda HRC Castrol | 20 |
| 10. | Jack Miller | Prima Pramac Yamaha MotoGP | 19 |
| 11. | Brad Binder | Red Bull KTM Factory Racing | 19 |
| 12. | Enea Bastianini | Red Bull KTM Tech3 | 16 |
| 13. | Pedro Acosta | Red Bull KTM Factory Racing | 16 |
| 14. | Fabio Quartararo | Monster Energy Yamaha MotoGP Team | 16 |
| 15. | Joan Mir | Honda HRC Castrol | 10 |
| 16. | Alex Rins | Monster Energy Yamaha MotoGP Tea | 10 |
| 17. | Maverick Vinales | Red Bull KTM Tech3 | 6 |
| 18. | Raul Fernandez | Trackhouse MotoGP Team | 5 |
| 19. | Fermin Aldeguer | BK8 Gresini Racing MotoGP | 3 |
| 20. | Augusto Fernandez | Prima Pramac Yamaha MotoGP | 3 |
| 21. | Miguel Oliveira | Prima Pramac Yamaha MotoGP | 2 |
| 22. | Lorenzo Salvadori | Aprilia Racing | 1 |
| 23. | Somkiat Chantra | IDEMITSU Honda LCR | 0 |
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Kwalifikacje do GP Japonii F1 2025